RT–PCR analyzes

FF Fernande Freyermuth
FR Frédérique Rau
YK Yosuke Kokunai
TL Thomas Linke
CS Chantal Sellier
MN Masayuki Nakamori
YK Yoshihiro Kino
LA Ludovic Arandel
AJ Arnaud Jollet
CT Christelle Thibault
MP Muriel Philipps
SV Serge Vicaire
BJ Bernard Jost
BU Bjarne Udd
JD John W. Day
DD Denis Duboc
KW Karim Wahbi
TM Tsuyoshi Matsumura
HF Harutoshi Fujimura
HM Hideki Mochizuki
FD François Deryckere
TK Takashi Kimura
NN Nobuyuki Nukina
SI Shoichi Ishiura
VL Vincent Lacroix
AC Amandine Campan-Fournier
VN Vincent Navratil
EC Emilie Chautard
DA Didier Auboeuf
MH Minoru Horie
KI Keiji Imoto
KL Kuang-Yung Lee
MS Maurice S. Swanson
AM Adolfo Lopez de Munain
SI Shin Inada
HI Hideki Itoh
KN Kazuo Nakazawa
TA Takashi Ashihara
EW Eric Wang
TZ Thomas Zimmer
DF Denis Furling
MT Masanori P. Takahashi
NC Nicolas Charlet-Berguerand
request Request a Protocol
ask Ask a question
Favorite

Total RNA was isolated by TriReagent (Molecular Research Center). A total of 1 μg of total RNA isolated from heart samples of control or DM individual was subjected to reverse transcription using random hexanucleotide and the Transcriptor High Fidelity cDNA synthesis kit (Roche Diagnostics). PCR was performed with Taq polymerase (Roche), using the following protocol: one denaturation step at 94 °C for 2 min, 30 cycles of amplification 94 °C for 1 min, 60 °C for 1 min, 72 °C for 2 min and a final step at 72 °C for 5 min using primers described in the Supplementary Table 4. The PCR products were precipitated, analysed by electrophoresis on a 6.5% polyacrylamide gel, stained with ethidium bromide and quantified using a PhosphorImager Typhoon scanner (GE Healthcare) and the ImageQuaNT software. Concerning analysis of alternative splicing of human SCN5A, the forward primer was located within SCN5A exon 5 (FWD: 5′- CTTCTGCCTGCACGCGTTCAC -3′) and the reverse primer within SCN5A exon 7 (REV: 5′- CAGAAGACTGTGAGGACCATC -3′). Since SCN5A exons 6A or 6B are of similar size (92 nts), PCR products were digested by BstBI enzyme before loading on 6.5% polyacrylamide gel, resulting in PCR products of 240 bp (exon 6B) and a doublet of 115 bp and 125 bp (exon 6A digested by BstBI).

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A