Quality trimming and adapter removal

TT Todd J. Treangen
GS George Schoeler
AP Adam M. Phillippy
NB Nicholas H. Bergman
MT Michael J. Turell
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The reads were adapter clipped and quality trimmed using ea-utils, part of MetAMOS [19] (fastq-mcf command, default parameters) using the Nextera XT adapter sequence CTGTCTCTTATACACATCT.

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