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Quality checks were done with fastQC on the Galaxy website hosted on the Abims Bioinformatics Platform (Roscoff, France) (http://abims.sb-roscoff.fr/resources/galaxy, last accessed 19 June 2017). The raw reads were then filtered by the Genotoul Bioinformatics Platform (Toulouse, France) with trimming of the low-quality reads with an average Phred score <28 (see Supplementary Table S1 at JXB online).
Copyright and License information: ©2017 The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
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