Cells were stimulated for 30 h and then stained with one of six hashtag (HTO) antibodies for multiplexing. Single-cell library preparation was done with the 10× Genomics platform (95). Paired-end sequencing was performed on a NextSeq2000 (Illumina). Analysis was done with Monocle3 (v 1.2.9) (96), and gene–gene correlations were quantified using LASSO regression (71) in R.
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