Raw GBS data are available at the European Nucleotide Archive under the project accession PRJEB40592. The Tx430 NAM data were accessed from dryad at doi: 10.5061/dryad.63h8fd4 (Hu et al. 2019). Scripts are available on GitHub (https://github.com/jlboat/CP-NAM) under MIT License. Code freezes are available for BWA and PopLDdecay via Singularity containers (Kurtzer et al. 2017) and were executed using Singularity version 3.5.3. Containers may be directly pulled from SingularityHub: https://singularity-hub.org/collections/2877. Supplemental materials available at figshare: https://figshare.com/s/0ba752156d0cb7fb6404. CP-NAM seeds are available upon request.
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