Materials and Reagents

3.5 cm cell culture dish (Greiner Bio One International, CELLSTAR^®, catalog number: 627160 )
Sterile pipette filter tips 200 and 1,000 μl (Greiner Bio One International, catalog numbers: 739288 and 740288 , respectively)
Parafilm M (Sigma-Aldrich, catalog number: P7668 )
15 ml centrifuge tube (Greiner Bio One International, CELLSTAR^®, catalog number: 188261 )
50 ml centrifuge tube (Greiner Bio One International, CELLSTAR^®, catalog number: 227261 )
1.8 ml round bottom cryogenic tubes (Thermo Fisher Scientific, Thermo Scientific^TM, catalog number: 375418 )
0.22 μm syringe filter (GVS, catalog number: 1213641 )
10 and 20 ml syringes (SFM Hospital Products, catalog numbers: 534235 and 534236 , respectively)
2 and 10 ml Serological pipets (Greiner Bio One International, CELLSTAR^®, catalog numbers: 710180 and 607107 , respectively)
Phosphate-buffered saline (PBS), pH 7.4 tablets (Thermo Fisher Scientific, Gibco^TM, catalog number: 18912014 )
Paraformaldehyde (Sigma-Aldrich, catalog number: 76240 )
Note: This product has been discontinued.
Sodium hydroxide (NaOH), 10 M (Sigma-Aldrich, catalog number: 72068 )
Fibronectin human (Imtek, catalog number: H Fne-C )
Vitronectin human (Imtek, catalog number: H Vne-C )
Collagen IV bovine (Imtek, catalog number: B C44-C )
Acetic acid (Sigma-Aldrich, catalog number: 695092 )
Ethanol 96% (Sigma-Aldrich, catalog number: 24105 )
Note: This product has been discontinued.
Sterile distilled water
1x phosphate-buffered saline (PBS) pH 7.4 (see Recipes)
Formaldehyde solution (see Recipes)
Human fibronectin solution (prepare freshly) (see Recipes)
Human vitronectin solution (prepare freshly) (see Recipes)
Bovine collagen IV solution (prepare freshly) (see Recipes)

Equipment

Pipette controller (Corning, catalog number: 4091 )
Automatic single-channel pipettes, 20-200 and 100-1,000 μl (Gilson-compatible)
Magnetic hot plate stirrer (Sigma-Aldrich, catalog number: Z168580 )
Magnetic stirring bar, 7 x 2 mm (Fisher Scientific, Fisherbrand^TM, catalog number: 14-513-63 )
Laminar flow tissue culture hood
Note: This item can be ordered from any qualified company.
Refrigerator with interior power outlets
Note: This item can be ordered from any qualified company.
CO₂ incubator (Sanyo, catalog number: MCO-18AIC )
Note: This product has been discontinued. Possible substitute: Panasonic Healthcare, model: MCO-18AC.
Centrifuge 5810 R (Eppendorf, model: 5810 R , catalog number: 5811000320)
Autoclave
Note: This item can be ordered from any qualified company.

Procedure

Coating Petri dishes with fibronectin followed by formaldehyde fixation
Note: All procedures below should be performed under a laminar flow hood.
1. Add 1 ml of the 50 µg/ml fibronectin solution (see Recipes) to each of the 3.5-cm Petri dishes. Make sure the entire dish surface is completely covered by gently swirling the solution or redistributing it over the surface using pipette tip.
  Note: The fibronectin layer is only about 1-mm deep for the indicated volume, thus it is recommended to perform this operation with Petri dishes placed on a strictly horizontal surface to ensure even coverage of all areas of the dish.
2. Incubate dishes with the lid on for 1.5 h at 37 °C in a humidified CO₂ incubator.
3. Aspirate carefully and save the fibronectin solution.
  Note: The saved fibronectin solution can be re-used at least once. Store it at 4 °C and use within one week.
4. Add 1 ml of 0.4% formaldehyde solution (see Recipes). Incubate dishes with the lid on for 20 min under a sterile laminar flow hood.
5. Carefully aspirate the formaldehyde solution, wash twice with 2 ml of sterile PBS and then 4 times with 4 ml of sterile PBS.
  Note: Formaldehyde solution should be disposed of as a hazardous waste.
6. Dry dishes for 1 h under the laminar flow hood.
  Note: Fibronectin-covered dishes can be sealed with Parafilm and stored at 4 °C for up to 1 week before use.
Coating Petri dishes with vitronectin followed by formaldehyde fixation
Note: All procedures below should be performed under a laminar flow hood.
1. Add 0.5 ml of the 10 µg/ml vitronectin solution (see Recipes) to each of the 3.5-cm Petri dishes. Make sure the entire dish surface is completely covered by gently swirling the solution or redistributing it over the surface using pipette tip.
  Note: The vitronectin layer is only about 0.5-mm deep for the indicated volume, thus it is recommended to perform this operation with Petri dishes placed on a strictly horizontal surface to ensure an even coverage of all areas of the dish.
2. Incubate dishes with the lid on for 1.5 h at 37 °C in a humidified CO₂ incubator.
3. Aspirate carefully and save the vitronectin solution.
  Note: The saved vitronectin solution can be re-used at least once. Store it at 4 °C and use within one week.
4. Add 1 ml of 0.4% formaldehyde solution (see Recipes). Incubate dishes with the lid on for 20 min under a sterile laminar flow hood.
5. Carefully aspirate the formaldehyde solution, wash twice with 2 ml of sterile PBS and then 4 times with 4 ml of sterile PBS.
  Note: Formaldehyde solution should be disposed of as a hazardous waste.
6. Dry dishes for 1 h under the laminar flow hood.
  Note: Vitronectin-covered dishes can be sealed with Parafilm and stored at 4 °C for up to 1 week before use.
Сoating Petri dishes with collagen IV followed by formaldehyde fixation
Note: Coating Petri dishes overnight is performed in the refrigerator, the rest of procedures should be performed under a laminar flow hood while keeping collagen solution on ice and minimizing exposure to room temperature conditions.
1. Add 0.5 ml of the 50 µg/ml collagen IV solution (see Recipes) to each of 3.5-cm Petri dishes. Make sure the entire dish surface is completely covered by gently swirling the solution or redistributing it over the surface using pipette tip. Immediately transfer the dishes to the refrigerator.
2. Incubate dishes with the lid on overnight at 4 °C.
  Note: The collagen layer is only about 0.5-mm deep for the indicated volume, thus it is important to perform this operation with Petri dishes placed on a strictly horizontal surface to ensure even coverage of all areas of the dish.
3. Transfer dishes to the laminar flow hood, carefully aspirate and save collagen solution.
  Note: The saved collagen solution can be re-used at least once. Store it at 4 °C and use within one week.
4. Add 1 ml of 0.4% formaldehyde solution (see Recipes). Incubate for 20 min under sterile laminar flow hood.
5. Carefully aspirate the formaldehyde solution, wash twice with 2 ml of sterile PBS and then 4 times with 4 ml of sterile PBS.
  Note: Formaldehyde solution should be disposed of as a hazardous waste.
6. Dry dishes for 1 h under the laminar flow hood.
  Note: Fibronectin-covered dishes can be sealed with Parafilm and stored at 4 °C for up to 1 week before use.

Data analysis

The assessment of the success of ECM protein coating and fixation includes analysis of MSC or other primary cell proliferation rate. Proliferation rates are determined by seeding 15 to 30 thousand cells per 3.5-cm dish followed by culturing for 1 or 2 days. A minimal testing setup includes: a) control untreated dishes; b) dishes, coated with ECM protein but unfixed; c) dishes coated with ECM and fixed with formaldehyde. Each variant is performed in triplicate, cells after culturing are collected by trypsinization followed by manual or automatic cell counting. It is recommended to perform counting of each cell sample two or three times using independent cell aliquots to increase the accuracy of analysis. It is important to assess the cell proliferation while the cells are within the exponential growth phase, that is, with cell confluence not exceeding 50%. The proliferation rate can be represented as an expansion factor (ratio of harvested to seeded cells) or population doublings (log₂ of expansion factor). The results are analyzed by determining mean, standard deviations and performing Student’s t-tests. The typical result of such analysis is shown in Figure 1.

Figure 1. Controlled fibronectin fixation significantly enhances expansion of mesenchymal stem cells (MSCs). Mouse MSC growth under hypoxia conditions (5% O₂) on control uncoated dishes (TCP) and dishes coated with fibronectin at a concentration of 50 µg/ml. Fibronectin-coated dishes were left unfixed (FN/0%) or fixed with 0.2% formaldehyde (FN/0.2%) or 0.4% formaldehyde (FN/0.4%). Y axis depicts the number of population doublings underwent by the culture within 24 h. Data are presented as mean ± SD.

Notes

Imtek is a Russian company producing, among others, extracellular matrix proteins for cell culture. Their website: http://new.imtek.ru/eng. We have as yet no experience with the extracellular matrix proteins from other companies.
The formaldehyde concentrations producing best results in our setup for 20-min fixation time are 0.3%-0.4%. Higher formaldehyde concentrations result in diminished effects on cell proliferation (Andreeva et al., 2016). When working with other extracellular matrix proteins not tested by us, it is highly advisable to perform test fixations with formaldehyde concentrations ranging from 0.2% to 0.6% to find the optimal fixation conditions.
The measured temperature during formaldehyde fixation (i.e., under laminar flow hood) in our setup is 24 °C to 26 °C. Since the level of fixation depends on the temperature, it is recommended to determine the temperature under the laminar hood to make sure the deviation from the above temperature does not exceed 2 °C. If the temperature is out of this range, it is recommended to perform test fixations for somewhat different periods of time to determine the optimal fixation time for a given experimental setup.
According to our results (Andreeva et al., 2016), coating Petri dishes with fibronectin at the 50 µg/ml concentration produced better results as compared to the 10 µg/ml concentration, whereas increasing fibronectin concentration to 250 µg/ml produced only a small additional effect. Although we did not test this yet, it is fairly possible that extending time for coating dishes over the 1.5-h period used in our protocol may produce a sizeable increase in the effects of fibronectin layers at 10 µg/ml concentration.
Coating with vitronectin, due to a high cost of this protein, was performed at lower concentration (10 µg/ml) as compared to fibronectin and collagen IV (50 µg/ml), and produced smaller effects than those observed for the latter two proteins (Andreeva et al., 2016). Based on analogy with fibronectin results, it is likely that increasing concentration of vitronectin during plastic coating will produce larger effects.
Since the treatment of plastic surfaces for different types vessels and by various manufacturers may differ, it is fairly possible that the effects of fixed extracellular matrix protein layers on cell proliferation may vary. In our hands, fibronectin coating followed by fixation was more efficient for 3.5-cm Petri dishes than for 6-well plates.
Formaldehyde during storage may polymerize at lower temperatures and decompose at higher temperatures, thus decreasing the effective formaldehyde concentration. It is therefore recommended to use the prepared formaldehyde solution within one week and, preferably, prepare formaldehyde solution freshly for each fixation experiment.
It is important that collagen IV is processed at low temperature to prevent its slow denaturation which occurs even at room temperature.
Among the cell types tested by us, the most pronounced effects were observed for mesenchymal stem cells, both murine and human ones, smaller effects were obtained for fibroblasts, and no positive effects were observed for established cell lines (Andreeva et al., 2016).

Recipes

1x phosphate-buffered saline (PBS) pH 7.4
2 tablets PBS (10 g)
Add distilled water to a final volume of 1 L
Sterilize by autoclaving
Store at room temperature
Formaldehyde solution
Add 4.0 g paraformaldehyde to a beaker with magnetic stirring bar
Add distilled water to a final volume 100 ml
Boil until complete dissolution on a hot plate magnetic stirrer, cool down
Add 10 N NaOH dropwise to pH 7.4
Store at 5 °C, use within 1 week
Dilute prior to the experiment to the desired concentration (usually, 0.4%) with sterile 1x PBS
Human fibronectin solution (prepare freshly)
1 ml fibronectin sterile solution 1 mg/ml
19 ml sterile 1x PBS
Store at 4 °C, use within one week
Human vitronectin solution (prepare freshly)
0.25 mg sterile vitronectin dry powder
25 ml sterile 1x PBS
Store at 4 °C, use within one week
Bovine collagen IV solution (prepare freshly)
Notes:
1. All manipulations should be performed at temperatures 0 °C to 5 °C using pre-chilled solutions.
2. Sterilize the magnet before use in 70% ethanol for 1 h, then under UV irradiation for 1 h.

Add 1.0 ml of 20 mM acetic acid (filter-sterilized) to 0.5 mg sterile collagen IV dry powder in a 1.8-ml round-bottom cryovial
Add a small-size magnetic stirring bar and stir the collagen solution overnight on a magnetic stirrer at 4 °C
Dilute the prepared collagen IV solution 10-fold with cold sterile 20 mM acetic acid to a final concentration of 50 µg/ml
Store the final solution at temperature 4 °C, use within one week

Acknowledgments

The protocol described herein was adapted from Andreeva et al. (2016). This work was supported by the grant (No. 14-04-01855) from the Russian Foundation for Basic Research and by the Program of fundamental research for state academies for 2013-2020 years (Task 0103-2014-0006 Subprogram #58 Molecular genetics, mechanisms of realization of genetic information, bioengineering).

References

Andreeva, N. V., Leonova, O. G., Popenko, V. I. and Belyavsky, A. V. (2016). Controlled formaldehyde fixation of fibronectin layers for expansion of mesenchymal stem cells. Anal Biochem 514: 38-41.
Prewitz, M. C., Seib, F. P., von Bonin, M., Friedrichs, J., Stissel, A., Niehage, C., Muller, K., Anastassiadis, K., Waskow, C., Hoflack, B., Bornhauser, M. and Werner, C. (2013). Tightly anchored tissue-mimetic matrices as instructive stem cell microenvironments. Nat Methods 10(8): 788-794.
Rajaraman, G., White, J., Tan, K. S., Ulrich, D., Rosamilia, A., Werkmeister, J. and Gargett, C. E. (2013). Optimization and scale-up culture of human endometrial multipotent mesenchymal stromal cells: potential for clinical application. Tissue Eng Part C Methods 19(1): 80-92.
Sawada, N., Tomomura, A., Sattler, C. A., Sattler, G. L., Kleinman, H. K. and Pitot, H. C. (1987). Effects of extracellular matrix components on the growth and differentiation of cultured rat hepatocytes. In Vitro Cell Dev Biol 23(4): 267-273.