We used n-grams as features. In clinical text, unigrams are single words, and bigrams are two words that occur in a sequence. For example, in the phrase “patient owns a shotgun” the unique unigrams are patient, owns, a, and shotgun. In the same phrase, patient_owns, owns_a, a_shotgun are unique bigrams. Alpha or numeric tokens (discrete words and numbers) were counted in the unigrams and bigrams. The features included unique unigrams with a frequency greater than 34, and unique bigrams in the annotation spans with a frequency greater than four. These threshholds are empirically chosen to filter out the less prevalent n-grams and reduce overfitting. The training features for the model (for each document) consisted of binary indications of the presence of each of the identified unigrams and bigrams, along with the offset location of the keyphrase in the snippet.

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