The documentation of the IIMN workflow is shared in the GNPS documentations on GitHub (https://ccms-ucsd.github.io/GNPSDocumentation/fbmn-iin/), which also covers FBMN, classical MN, and other related tools. Suggested parameters for FBMN are described elsewhere7 and the reproducible molecular networking protocol5 describes MN parameters with step-by-step instructions. MZmine17 provides help dialogs with parameter descriptions for each module and documentation links on their website (http://mzmine.github.io/documentation.html). Tutorials and other references for MS-DIAL18 are provided on their project website (http://prime.psc.riken.jp/compms/msdial/main.html). Bioconductor hosts the XCMS16 and CAMERA13 packages together with related information and their documentation (https://bioconductor.org/).

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