Plotting was performed in figures 1, ,2,2, ,3,3, extended data figures 1, ,2,2, and and33 using ggplot2 version 3.3.1 unless otherwise noted. Comparisons for these figures were added using ggsignif version 0.6.0. Heatmaps on figures 2 and and33 were generated using pheatmap version 1.0.12. Sankey/Alluvial plots on Extended Data Fig. 1 were generated using ggalluvial version 0.12.072. Figure layouts for Figures 1, ,2,2, ,3,3, ,4,4, and Extended Data Figures 1, and and33 were generated using patchwork version 1.01 and edited in Adobe Illustrator 2021. Figure 4 and extended data figures 4 and and55 were generated with matplotlib v3.2.173. For all boxplots shown, box limitsq represent the interquartile range (IQR) with a centerline at the median. Whiskers represent the largest point ≤ 1.5 * IQR. All points are overlaid.

Note: The content above has been extracted from a research article, so it may not display correctly.

Please log in to submit your questions online.
Your question will be posted on the Bio-101 website. We will send your questions to the authors of this protocol and Bio-protocol community members who are experienced with this method. you will be informed using the email address associated with your Bio-protocol account.

We use cookies on this site to enhance your user experience. By using our website, you are agreeing to allow the storage of cookies on your computer.