Data from Affymetrix Human Transcriptome 2.0 microarrays for 104 stage T1 and 113 stage Ta tumors from the Leeds Multidisciplinary Research Tissue Bank following approval by the research ethics committee 10/H1306/7). All ethical regulations for work with human participants were followed. Total RNA was isolated from frozen tissue sections using a RNeasy Plus Micro Kit and amplified using the Affymetrix GeneChip WT PLUS Reagent Kit. The resulting cDNA was hybridized onto Affymetrix Human Transcriptome 2.0 microarrays. Quality control checks, gene level normalization (using SST-RMA) and signal summarization was conducted using Affymetrix Expression Console Software.

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