HAdV-D37, HAdV-D19p, and HAdV-D26 used PDB IUXA (37), PDB 1UXB (37), and PDB 6QU8, respectively, as the input. HAdV-D8 was calculated using a homology model, generated as described below, for input.

The PDB2PQR server (V 2.1.1) (http://nbcr-222.ucsd.edu/pdb2pqr_2.1.1/) was used to assign charge and radius parameters using the PARSE force field and assign protonation states using Propka, at pH 7.35. APBS was used to calculate electrostatic surface potentials, and the map output was visualized in PyMOL (59).

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