DNA library construction and sequencing of contemporary samples were conducted at the Kinghorn Centre for Clinical Genomics at the Garvan Institute in Sydney, Australia or Novogene Bioinformatics Technology Corporation Limited in Beijing, China. Sequencing libraries were generated using the Truseq Nano DNA HT Sample Preparation Kit (Illumina, USA) following the manufacturer’s recommendations. Libraries were then 150–base pair paired-end sequenced on an Illumina HiSeq X. Genome coverage of this sequencing averaged between 45–60 ×.

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