Ancient samples were sequenced using 100–base pair single-end reads. This sequencing was conducted using either a HiSeq 2500 Sequencing System (Illumina) at the Danish National High-Throughput DNA Sequencing Centre in Copenhagen or on a MiSeq Sequencing System (Illumina) using 150 version 3 kits at the Griffith University DNA Sequencing Facility. Sequences were base called using CASAVA 1.8.2 (Illumina).

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